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Publications

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Title Investigators Year
New tRNA contacts facilitate ligand binding in a Mycobacterium smegmatis T box riboswitch Tina Henkin, Jane K Frandsen (OSBP alumni), Anna V Sherwood, Frank J Grundy 2018
Quality control by trans-editing factor prevents global mistranslation of non-protein amino acid α-aminobutyrate Karin Musier-Forsyth, Alexandra B Kuzmishin (OSBP alumni), Jo Marie Bacusmo, William A Cantara, Yuki Goto, Hiroaki Suga 2018
Quantification of miRNAs Co-Immunoprecipitated with Argonaute Proteins Using SYBR Green-Based qRT-PCR Hong Duc Chau Phan, Kotaro Nakanishi, Junan Li, Ming Poi 2018
RNA Cap Methyltransferase Activity Assay Jackson B Trotman, Daniel R Schoenberg 2018
RNA-binding proteins and heat-shock protein 90 are constituents of the cytoplasmic capping enzyme interactome Vicki Wysocki, Jackson B Trotman (OSBP alumni), Bernice A Agana (OSBP alumni), Andrew J Giltmier, Daniel R Schoenberg 2018
Salmonella-Mediated Inflammation Eliminates Competitors for Fructose-Asparagine in the Gut Blake Szkoda, Venkat Gopalan, Vicki Wysocki, Jikang Wu, Anice Sabag-Faigle, Mikayla A Borton, Linnea F M Kop, Brooke L Deatherage Kaiser, Stephen R Lindemann, Ryan S Renslow, Siwei Wei, Carrie D Nicora, Karl K Weitz, Young-Mo Kim, Joshua N Adkins, Thomas O Metz, Prosper Boyaka, Kelly C Wrighton, Brian M M Ahmer 2018
SAMHD1 Impairs HIV-1 Gene Expression and Negatively Modulates Reactivation of Viral Latency in CD4+ T Cells Jenna M Antonucci, Sun Hee Kim, Corine St Gelais, Serena Bonifati, Tai-Wei Li, Olga Buzovetsky, Kirsten M Knecht, Alice A Duchon, Yong Xiong, Karin Musier-Forsyth, Li Wu 2018
Stromal PTEN determines mammary epithelial response to radiotherapy Gina M Sizemore, Anisha M Hammer, Michael C Ostrowski 2018
TbUTP10, a protein involved in early stages of pre-18S rRNA processing in Trypanosoma brucei Drahomíra Faktorová, Anita Bär, Hassan Hashimi, Katherine McKenney, Aleš Horák, Achim Schnaufer, Mary Anne T Rubio, Juan D Alfonzo, Julius Lukeš 2018
5'-End sequencing in Saccharomyces cerevisiae offers new insights into 5'-ends of tRNAHis and snoRNAs Jane Jackman, Samantha Dodbele (OSBP alumni), Blythe Moreland, Spencer M Gardner, Ralf Bundschuh 2019
A Microfluidic Chip Enables Isolation of Exosomes and Establishment of Their Protein Profiles and Associated Signaling Pathways in Ovarian Cancer Miranda Gardner, Michael Freitas, Kalpana Deepa Priya Dorayappan, Colin L Hisey, Roman A Zingarelli, Brentley Q Smith, Michelle D S Lightfoot, Rajan Gogna, Meghan M Flannery, John Hays, Derek J Hansford, Lianbo Yu, David E Cohn, Karuppaiyah Selvendiran 2019
A recap of RNA recapping Jackson B Trotman, Daniel R Schoenberg 2019
A Temporal Order in 5'- and 3'- Processing of Eukaryotic tRNAHis Jane Jackman, Tracy M Roach (OSBP alumni), Marie-Theres Pohler, Heike Betat, Mario Morl 2019
Chemical footprinting and kinetic assays reveal dual functions for highly conserved eukaryotic tRNAHis guanylyltransferase residues Jane Jackman, Ashanti O Matlock (OSBP alumni), Brian A Smith (OSBP alumni) 2019
Complete sequencing of the SMN2 gene in SMA patients detects SMN gene deletion junctions and variants in SMN2 that modify the SMA phenotype Arthur Burghes, Corey Ruhno (OSBP alumni), Vicki L McGovern, Matthew R Avenarius, Pamela J Snyder, Thomas W Prior, Flavia C Nery, Abdurrahman Muhtaseb, Jennifer S Roggenbuck, John T Kissel, Valerie A Sansone, Jennifer J Siranosian, Alec J Johnstone, Pann H Nwe, Ren Z Zhang, Kathryn J Swoboda 2019
Computational Studies of Cardiac and Skeletal Troponin Steffen Lindert, Jacob D Bowman (OSBP alumni) 2019
Correction to: Determinant roles of dendritic cell-expressed Notch Delta-like and Jagged ligands on anti-tumor T-cell immunity Elena E Tchekneva, Mounika U L Goruganthu, Nicholas Long, Thomas Magliery 2019
Crystal structure of the Redβ C-terminal domain in complex with λ Exonuclease reveals an unexpected homology with λ Orf and an interaction with Escherichia coli single stranded DNA binding protein Brian Caldwell, Jordan Hempfling, Dehua Pei, Charles Bell, Ekaterina Zakharova, Gabriel T Filsinger, Timothy M Wannier, Lee Chun-Der, George M Church 2019
Determinant roles of dendritic cell-expressed Notch Delta-like and Jagged ligands on anti-tumor T cell immunity Elena E Tchekneva, Mounika U L Goruganthu, Nicholas Long, Thomas Magliery 2019
Determinants of target prioritization and regulatory hierarchy for the bacterial small RNA SgrS Tina Henkin, Jane K Frandsen (OSBP alumni), Maksym Bobrovskyy, Muhammad S Azam, Jichuan Zhang, Anustup Poddar, Xiangqian Ma, Taekjip Ha, Carin K Vanderpool 2019
Distinct substrate specificities of the human tRNA methyltransferases TRMT10A and TRMT10B Jane Jackman, Nathan Howell (OSBP alumni), Manasses Jora, Benjamin F Jepson, Patrick A Limbach 2019
EGL-38/Pax coordinates development in the Caenhorhabditis elegans egg-laying system through EGF pathway dependent and independent functions Allison M Webb Chasser (OSBP alumni), Ryan W Johnson, Helen M Chamberlin 2019
Elucidating the Molecular Mechanism of Ultrafast Pfr-State Photoisomerization in Bathy Bacteriophytochrome PaBphP Dongping Zhong, Dihao Wang (OSBP alumni), Yangzhong Qin, Sheng Zhang, Lijuan Wang, Xiaojing Yang 2019
Global analysis of protein synthesis in Flavobacterium johnsoniae reveals the use of Kozak-like sequences in diverse bacteria Zakkary McNutt, Kurt Fredrick, William D Baez, Bappaditya Roy, Elan A Shatoff, Shicheng Chen, Ralf Bundschuh 2019
Insights into Catalytic and tRNA Recognition Mechanism of the Dual-Specific tRNA Methyltransferase from Thermococcus kodakarensis Jane Jackman, Samantha Dodbele (OSBP alumni), Aiswarya Krishnamohan 2019