Publications

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Title Investigators Year
STK11/LKB1 Loss of Function Is Associated with Global DNA Hypomethylation and S-Adenosyl-Methionine Depletion in Human Lung Adenocarcinoma Vicki Wysocki, Michael J Koenig, Bernice A Agana (OSBP Alumni), Jacob M Kaufman, Michael F Sharpnack, Walter Z Wang, Christoph Weigel, Fabio C P Navarro, Joseph M Amann, Nicole Cacciato, Rajeswara Rao Arasada, Mark B Gerstein, Christopher Oakes, David P Carbone 2021
Stromal Platelet-Derived Growth Factor Receptor-β Signaling Promotes Breast Cancer Metastasis in the Brain Katie A Thies, Anisha M Hammer, Blake E Hildreth 3rd, Sarah A Steck, Jonathan M Spehar, Raleigh D Kladney, Jennifer A Geisler, Manjusri Das, Michael C Ostrowski 2021
Structural basis of sequestration of the anti-Shine-Dalgarno sequence in the Bacteroidetes ribosome Zakkary McNutt, Kurt Fredrick, Vikash Jha, Bappaditya Roy, Dushyant Jahagirdar, Elan A Shatoff, Bethany L Boleratz, Dean E Watkins, Ralf Bundschuh, Kaustuv Basu, Joaquin Ortega 2021
The many faces of RNA-based RNase P, an RNA-world relic. Hong Duc Chau Phan, Venkat Gopalan, Lai LB, Zahurancik WJ 2021
Transient kinetic analysis for studying ionizations in RNA modification enzyme mechanisms Jane Jackman, Aiswarya Krishnamohan, Samantha Dodbele 2021
Use of tandem affinity-buffer exchange chromatography online with native mass spectrometry for optimizing overexpression and purification of recombinant proteins Stella Lai, Jamison Law, Venkat Gopalan, Vicki Wysocki, Pankajavalli Thirugnanasambantham, Vaishnavi Sidharthan, Andrew S Norris 2021
Utilization of Hydrophobic Microenvironment Sensitivity in Diethylpyrocarbonate Labeling for Protein Structure Prediction. Sarah Biehn, Steffen Lindert, Patanachai Limpikirati, Richard W Vachet 2021
Voluntary wheel running with and without follistatin overexpression improves NMJ transmission but not motor unit loss in late life of C57BL/6J mice Anton Blatnik, Arthur Burghes, Deepti Chugh, Chitra C Iyer, Prameela Bobbili, Brian K Kaspar, Kathrin Meyer, Brian C Clark, W David Arnold 2021
What Genetics Has Told Us and How It Can Inform Future Experiments for Spinal Muscular Atrophy, a Perspective Anton Blatnik, Arthur Burghes, Vicki L McGovern 2021
A Wide-Field Imaging Approach for Simultaneous Super-Resolution Surface-Enhanced Raman Scattering Bioimaging and Spectroscopy. Brian Scarpitti, Zachary Schultz, Shoup DN 2022
Accounting for Neighboring Residue Hydrophobicity in Diethylpyrocarbonate Labeling Mass Spectrometry Improves Rosetta Protein Structure Prediction. Sarah Biehn, Steffen Lindert, Danielle M Picarello, Xiao Pan, Richard W Vachet 2022
Activity and Synergy of Cu-ATCUN Antimicrobial Peptides. Jenna Greve, James Cowan 2022
Adipose Tissue Myeloid-Lineage Neuroimmune Cells Express Genes Important for Neural Plasticity and Regulate Adipose Innervation Miranda Gardner, Magdalena Blaszkiewicz, Gilian Gunsch, Jake W Willows, Jesse A Sepeda, Andrew R Sas, Kristy Townsend 2022
Cadaverine Is a Switch in the Lysine Degradation Pathway in Pseudomonas aeruginosa Biofilm Identified by Untargeted Metabolomics. Abigail Leggett, Rafael Brüschweiler, Da-Wei Li, Devin Sindeldecker, Amelia Staats, Nicholas Rigel, Lei Bruschweiler-Li, Paul Stoodley 2022
Characterization of a Salmonella Transcription Factor-DNA Complex and Identification of the Inducer by Native Mass Spectrometry. Blake Szkoda, Vicki Wysocki, Venkat Gopalan, Di Capua A, Shaffer J, Behrman EJ 2022
Collective mechanical responses of cadherin-based adhesive junctions as predicted by simulations. Brandon Neel, Marcos Sotomayor, Collin R Nisler, Sanket Walujkar, Raul Araya-Secchi 2022
COLMARq: A Web Server for 2D NMR Peak Picking and Quantitative Comparative Analysis of Cohorts of Metabolomics Samples. Abigail Leggett, Rafael Brüschweiler, Da-Wei Li, Lei Bruschweiler-Li 2022
Comparative analysis of piRNA sequences, targets and functions in nematodes Benjamin Pastore, Hannah L Hertz, Wen Tang 2022
Controlling the Direction of S-Nitrosation versus Denitrosation: Reversible Cleavage and Formation of an S-N Bond within a Dicopper Center. Alina Yerbulekova, Hannah Shafaat, Tao W, Moore CE, Zhang S 2022
Determination of lentiviral titer by surface enhanced Raman scattering. Brian Scarpitti, Zachary Schultz, Morder CJ, Balss KM 2022
Differential metabolism between biofilm and suspended Pseudomonas aeruginosa cultures in bovine synovial fluid by 2D NMR-based metabolomics. Abigail Leggett, Rafael Brüschweiler, Da-Wei Li, Lei Bruschweiler-Li, Anne Sullivan, Paul Stoodley 2022
Elastic versus brittle mechanical responses predicted for dimeric cadherin complexes. Brandon Neel, Marcos Sotomayor, Collin R Nisler, Sanket Walujkar 2022
Elucidation of structure-function relationships in Methanocaldococcus jannaschii RNase P, a multi-subunit catalytic ribonucleoprotein. Hong Duc Chau Phan, Mark Foster, Vicki Wysocki, Venkat Gopalan, Norris AS, Du C, Stachowski K, Khairunisa BH, Sidharthan V, Mukhopadhyay B 2022
Generation of Proteins with Free N-Terminal Cysteine by Aminopeptidases. Jordan Hempfling, Amanda Hummon, Dehua Pei, Sekera ER, Sarkar A 2022
Genomic and transcriptomic profiling of phoenix colonies. Aubree Zimmer, Juan Alfonzo, Sindeldecker D, Dunn M, Anderson M, Stoodley P 2022