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Publications

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Title Investigators Year
DdmDE eliminates plasmid invasion by DNA-guided DNA targeting Xiao-Yuan Yang, Zhangfei Shen, Chen Wang, Kotaro Nakanishi, Tian-Min Fu 2024
Design of pseudosymmetric protein hetero-oligomers Ryan D Kibler, Sangmin Lee, Madison A Kennedy, Basile I M Wicky, Stella M Lai, Marius M Kostelic, Ann Carr, Xinting Li, Cameron M Chow, Tina K Nguyen, Lauren Carter, Vicki H Wysocki, Barry L Stoddard, David Baker 2024
Discovering functional interactions among schizophrenia-risk genes by combining behavioral genetics with cell biology Di Ma, Chen Gu 2024
Discovery of Nanomolar Inhibitors for Human Dihydroorotate Dehydrogenase Using Structure-Based Drug Discovery Methods William T Higgins, Sandip Vibhute, Chad Bennett, Steffen Lindert 2024
Dynamics in Cre-loxP site-specific recombination Mark P Foster, Matthew J Benedek, Tyler D Billings, Jonathan S Montgomery 2024
Facile synthesis of intra-nanogap enhanced Raman tags with different shapes Sanjun Fan, Brian T Scarpitti, Zhewen Luo, Abigail E Smith, Jian Ye, Zachary D Schultz 2024
Gas-Phase Fractionation Data-Independent Acquisition Analysis of 3D Cocultured Spheroid Tumor Model Reveals Altered Translational Processes and Signaling Using Proteomics Ariana E Shannon, Claire E Boos, Brian C Searle, Amanda B Hummon 2024
Insights into Ligand-Mediated Activation of an Oligomeric Ring-Shaped Gene-Regulatory Protein from Solution- and Solid-State NMR Rodrigo Muzquiz, Cameron Jamshidi, Christopher Jaroniec, Mark Foster, Daniel W Conroy 2024
Insights into the Mechanism of Paraoxonase-1: Comparing the Reactivity of the Six-Bladed β-Propeller Hydrolases Timothy J Grunkemeyer, David G Mata, Kiran Doddapaneni, Srividya Murali, Thomas J Magliery 2024
Lipidomics Profiling Reveals Differential Alterations after FAS Inhibition in 3D Colon Cancer Cell Culture Models Brian D Fries, Fernando Tobias, Yijia Wang, Joseph H Holbrook, Amanda B Hummon 2024
Mechanism of DNA Intercalation by Chloroquine Provides Insights into Toxicity Joha Joshi, Micah J McCauley, Michael Morse, Michael R Muccio, Joseph G Kanlong, Márcio S Rocha, Ioulia Rouzina, Karin Musier-Forsyth, Mark C Williams 2024
Molecular basis of Gabija anti-phage supramolecular assemblies Xiao-Yuan Yang, Zhangfei Shen, Jiale Xie, Jacelyn Greenwald, Ila Marathe, Qingpeng Lin, Wen Jun Xie, Vicki H Wysocki, Tian-Min Fu 2024
Nanodysferlins support membrane repair and binding to TRIM72/MG53 but do not localize to t-tubules or stabilize Ca2+ signaling Joaquin Muriel, Valeriy Lukyanenko, Thomas A Kwiatkowski, Yi Li, Sayak Bhattacharya, Kassidy K Banford, Daniel Garman, Hannah R Bulgart, Roger B Sutton, Noah Weisleder, Robert J Bloch 2024
NMR-based solution structure of the Caulobacter crescentus ProXp-ala trans-editing enzyme Antonia D Duran, Eric M Danhart, Xiao Ma, Alexandra B Kuzmishin Nagy, Karin Musier-Forsyth, Mark P Foster 2024
Pre-piRNA trimming safeguards piRNAs against erroneous targeting by RNA-dependent RNA polymerase Benjamin Pastore, Wen Tang, Hannah L Hertz 2024
Prion protein pathology in Ubiquilin 2 models of ALS Nhat T Le, Nam Chu, Gunjan Joshi, Nicole R Higgins, Ouada Nebie, Niyi Adelakun, Marie Butts, Mervyn J Monteiro 2024
Protein analysis using capillary electrophoresis coupled to mass spectrometry through vibrating sharp-edge spray ionization Makenzie T Witzel, Lindsay M Veltri, Marius Kostelic, Yousef S Elshamy, John A Lucas, Stella Lai, Chen Du, Vicki H Wysocki, Lisa A Holland 2024
PtuA and PtuB assemble into an inflammasome-like oligomer for anti-phage defense Yuanyuan Li, Zhangfei Shen, Mengyuan Zhang, Xiao-Yuan Yang, Sean P Cleary, Jiale Xie, Ila A Marathe, Marius Kostelic, Jacelyn Greenwald, Anthony D Rish, Vicki H Wysocki, Chong Chen, Qiang Chen, Tian-Min Fu, Yamei Yu 2024
Quantitative mass spectrometry imaging: therapeutics & biomolecules Joseph Holbrook, Amanda Hummon, Gabrielle E Kemper 2024
Single Cell MALDI-MSI Analysis of Lipids and Proteins within a Replicative Senescence Fibroblast Model Emily R Sekera, Lorena Rosas, Joseph H Holbrook, Quetzalli D Angeles-Lopez, Timur Khaliullin, Mauricio Rojas, Ana L Mora, Amanda B Hummon 2024
Solution structure, dynamics and tetrahedral assembly of Anti-TRAP, a homo-trimeric triskelion-shaped regulator of tryptophan biosynthesis in Bacillus subtilis Craig A McElroy, Elihu C Ihms, Deepak Kumar Yadav, Melody L Holmquist, Vibhuti Wadhwa, Vicki H Wysocki, Paul Gollnick, Mark P Foster 2024
Structural Basis for the Interaction of Redβ Single-Strand Annealing Protein with Escherichia coli Single-Stranded DNA-Binding Protein Katerina Zakharova, Mengqi Liu, Jacelyn R Greenwald, Brian C Caldwell, Zihao Qi, Vicki H Wysocki, Charles E Bell 2024
Structures and functions of short argonautes Chen Wang, Zhangfei Shen, Xiao-Yuan Yang, Tian-Min Fu 2024
Target cleavage and gene silencing by Argonautes with cityRNAs Huaqun Zhang, GeunYoung Sim, Audrey C Kehling, Vishal Annasaheb Adhav, Andrew Savidge, Benjamin Pastore, Wen Tang, Kotaro Nakanishi 2024
The early transition to cold-induced browning in mouse subcutaneous white adipose tissue (scWAT) involves proteins related to nerve remodeling, cytoskeleton, mitochondria, and immune cells Magdalena Blaszkiewicz, Cory P Johnson, Jake W Willows, Miranda L Gardner, Dylan R Taplin, Michael A Freitas, Kristy L Townsend 2024