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Publications

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Title Investigators Year
Extracting Residue Solvent Exposure from Covalent Labeling Data with Machine Learning: A Hybrid Approach for Protein Structure Prediction Elijah H Day, Steffen Lindert 2025
Identification of inhibitors of the Salmonella FraB deglycase, a drug target Jamison Law, Vicki Wysocki, Venkat Gopalan, Yuan Gao, Pankajavalli Thirugnanasambantham, Brian M M Ahmer 2025
In utero exposure to estrogenic bisphenol analogues increases mammary tissue stiffness Jillian M Poska, Clarissa Wormsbaecher, Brittney M Cumbia, Madeline R Price, Marcos Cortes-Medina, Jacob Holter, Shashwat Agarwal, Xiaokui Molly Mo, Jonathan W Song, Craig J Burd 2025
Key RNA-binding domains in the La protein establish tRNA modification levels in Trypanosoma brucei Lankani Gunaratne, Henry Moore, Nicholas Albaum, Ananth Casius, Jeremy Henderson, Alan Kessler, Eva Hegedűsová, Sneha Kulkarni, Henry Arthur, Robert L Ross, Zdeněk Paris, Richard Maraia, Todd M Lowe, Juan D Alfonzo 2025
Light-Reactive Norharmane Derivatization of Lipid Isomers by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Thomas R Fredriksen, Joseph H Holbrook, Lorena Rosas, Quetzalli D Angeles-Lopez, Ana L Mora, Mauricio Rojas, Amanda B Hummon 2025
Linker-Free Synthesis of Core/Satellite Nanoparticles for Single-Particle Surface-Enhanced Raman Spectroscopy and Photocatalysis Sanjun Fan, Brian T Scarpitti, Abigail E Smith, Zhewen Luo, Jian Ye, Zachary D Schultz 2025
MALDI Imaging and Spatial SILAC Proteomics of Three-Dimensional Multicellular Spheroids Dynamically Dosed with Doxorubicin-Encapsulating Liposomes Arbil Lopez, Joseph H Holbrook, Amanda B Hummon 2025
Metal Ion Requirement for Catalysis by 3'-5' RNA Polymerases Brandon W J Iwaniec, Madison M Allegretti, Jane E Jackman 2025
Mitophagy mitigates mitochondrial fatty acid β-oxidation deficient cardiomyopathy Nuo Sun, Hayley Barta, Samhita Chaudhuri, Kangxuan Chen, Jiacheng Jin, Hongke Luo, Mingchong Yang, Judith Krigman, Ruohan Zhang, Shridhar Sanghvi, Shiori Sekine, Hannah Sanders, Dominic Kolonay, Mudra Patel, Kedryn Baskin, Harpreet Singh, Pengyi Zhang, Gang Xin, Toren Finkel 2025
Multi-Omic Evaluation of PLK1 Inhibitor-Onvansertib-In Colorectal Cancer Spheroids Brian D Fries, Emily R Sekera, Joseph H Holbrook, Amanda B Hummon 2025
Multiscale Analysis Reveals Altered Characteristics in Femur and Mandible of Mice on a High Phosphate Diet Kristin Nguyen, Minji Kim, Andrew J Cheline, Peter Tsatalis, Yasaman Samanian, Olivia Jackson, Daniel A Branch, Hannah F Sanders, Farah A Al-Omari, Young C Jang, Beth S Lee, Kedryn K Baskin, Do-Gyoon Kim 2025
Native nucleosome-positioning elements as alternatives to the 601 sequence for nucleosome repositioning studies Ruo-Wen Chen, Shane D Stoeber, Ilana M Nodelman, Hengye Chen, Wenxuan Yang, Gregory D Bowman, Lu Bai, Michael G Poirier 2025
Novel Self-Cleaving Affinity Purification Method for Cellular Membrane-Associated Recombinant Paraoxonase-1 (rePON1) Enzyme Milton S Gonzalez-Serrano, Shuhan Chen, Alicia K Friedman, Will Caines, Mason Pierce, Thomas J Magliery, David W Wood 2025
Protein and DNA Conformational Changes Contribute to Specificity of Cre Recombinase Jonathan S Montgomery, Megan E Judson, Mark P Foster 2025
Protein bL38 facilitates incorporation of uL6 during assembly of the 50S subunit in Flavobacterium johnsoniae Md Siddik Alom, Dominic Arpin, Haojun Zhu, Brenna N Hay, Leonard J Foster, Joaquin Ortega, Kurt Fredrick 2025
Proteotoxic stress response drives T cell exhaustion and immune evasion Gautam Ghosh, Brian Searle, Ariana Shannon, Yi Wang, Anjun Ma, No-Joon Song, Yaa S Amankwah, Xingyu Chen, Weidong Wu, Ziyu Wang, Abbey A Saadey, Amir Yousif, Jay K Mandula, Maria Velegraki, Tong Xiao, Haitao Wen, Stanley Ching-Cheng Huang, Ruoning Wang, Christian M Beusch, Abdelhameed S Dawood, David E Gordon, Mohamed S Abdel-Hakeem, Hazem E Ghoneim, Gang Xin, Zihai Li 2025
Real-Time Imaging of Specific Genomic Loci With CRISPR/dCas9 in Human Cells Using CRISPRainbow Thomas Versosky, Li-Chun Tu, Dilshodbek U Nishonov 2025
Role of the sarcin-ricin loop of 23S rRNA in biogenesis of the 50S ribosomal subunit Sepideh Fakhretaha Aval, Kurt Fredrick, Amal Seffouh, Kyung-Mee Moon, Leonard J Foster, Joaquin Ortega 2025
Simultaneous ligand binding to intact and partially formed ATP-binding sites in the hexameric termination factor Rho Tyler D Billings, Kristie Baker, Philip Lacey, Matthew J Benedek, Rodrigo Muzquiz, Vicki H Wysocki, Mark P Foster 2025
Sm-site containing mRNAs can accept Sm-rings and are downregulated in Spinal Muscular Atrophy Anton J Blatnik 3rd, Manu Sanjeev, Jacob Slivka, Benjamin Pastore, Caleb M Embree, Wen Tang, Guramrit Singh, Arthur H M Burghes 2025
Spectroscopic and Computational Interrogation of a High-Valent Nickel-Dialkyl Complex Indicates Electronic Structure Asymmetry Drives C-C Bond Formation Reactivity Alina Yerbulekova, Yusuff Moshood, Leonel Griego, Hannah S Shafaat, Liviu M Mirica 2025
Structural basis for aminoacylation of cellular modified tRNALys3 by human lysyl-tRNA synthetase Swapnil C Devarkar, Christina R Budding, Chathuri Pathirage, Arundhati Kavoor, Cassandra Herbert, Patrick A Limbach, Karin Musier-Forsyth, Yong Xiong 2025
The oncogene SLC35F2 is a high-specificity transporter for the micronutrients queuine and queuosine Lyubomyr Burtnyak, Yifeng Yuan, Erwina Stojek, Xiaobei Pan, Lankani Gunaratne, Gabriel Silveira d'Almeida, Claire Fergus, Maria Martinelli, Colbie J Reed, Jessie Fernandez, Bhargesh Indravadan Patel, Isaac Marquez, Ann E Ehrenhofer-Murray, Manal A Swairjo, Juan D Alfonzo, Brian D Green, Vincent P Kelly, Valérie de Crécy-Lagard 2025
To initiate or not to initiate: A critical assessment of eIF2A, eIF2D, and MCT-1·DENR to deliver initiator tRNA to ribosomes Daisy J Grove, Paul J Russell, Michael G Kearse 2025
Translation reinitiation after uORFs does not fully protect mRNAs from nonsense-mediated decay Paul J Russell, Jacob A Slivka, Elaina P Boyle, Arthur H M Burghes, Michael G Kearse 2025