Publications

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Title Investigators Year
Insights into the Mechanism of Paraoxonase-1: Comparing the Reactivity of the Six-Bladed β-Propeller Hydrolases Timothy J Grunkemeyer, David G Mata, Kiran Doddapaneni, Srividya Murali, Thomas J Magliery 2024
Lipidomics Profiling Reveals Differential Alterations after FAS Inhibition in 3D Colon Cancer Cell Culture Models Brian D Fries, Fernando Tobias, Yijia Wang, Joseph H Holbrook, Amanda B Hummon 2024
Mechanism of DNA Intercalation by Chloroquine Provides Insights into Toxicity Joha Joshi, Micah J McCauley, Michael Morse, Michael R Muccio, Joseph G Kanlong, Márcio S Rocha, Ioulia Rouzina, Karin Musier-Forsyth, Mark C Williams 2024
Molecular basis of Gabija anti-phage supramolecular assemblies Xiao-Yuan Yang, Zhangfei Shen, Jiale Xie, Jacelyn Greenwald, Ila Marathe, Qingpeng Lin, Wen Jun Xie, Vicki H Wysocki, Tian-Min Fu 2024
Nanodysferlins support membrane repair and binding to TRIM72/MG53 but do not localize to t-tubules or stabilize Ca2+ signaling Joaquin Muriel, Valeriy Lukyanenko, Thomas A Kwiatkowski, Yi Li, Sayak Bhattacharya, Kassidy K Banford, Daniel Garman, Hannah R Bulgart, Roger B Sutton, Noah Weisleder, Robert J Bloch 2024
NMR-based solution structure of the Caulobacter crescentus ProXp-ala trans-editing enzyme Antonia D Duran, Eric M Danhart, Xiao Ma, Alexandra B Kuzmishin Nagy, Karin Musier-Forsyth, Mark P Foster 2024
Pre-piRNA trimming safeguards piRNAs against erroneous targeting by RNA-dependent RNA polymerase Benjamin Pastore, Wen Tang, Hannah L Hertz 2024
Prion protein pathology in Ubiquilin 2 models of ALS Nhat T Le, Nam Chu, Gunjan Joshi, Nicole R Higgins, Ouada Nebie, Niyi Adelakun, Marie Butts, Mervyn J Monteiro 2024
Protein analysis using capillary electrophoresis coupled to mass spectrometry through vibrating sharp-edge spray ionization Makenzie T Witzel, Lindsay M Veltri, Marius Kostelic, Yousef S Elshamy, John A Lucas, Stella Lai, Chen Du, Vicki H Wysocki, Lisa A Holland 2024
PtuA and PtuB assemble into an inflammasome-like oligomer for anti-phage defense Yuanyuan Li, Zhangfei Shen, Mengyuan Zhang, Xiao-Yuan Yang, Sean P Cleary, Jiale Xie, Ila A Marathe, Marius Kostelic, Jacelyn Greenwald, Anthony D Rish, Vicki H Wysocki, Chong Chen, Qiang Chen, Tian-Min Fu, Yamei Yu 2024
Quantitative mass spectrometry imaging: therapeutics & biomolecules Joseph Holbrook, Amanda Hummon, Gabrielle E Kemper 2024
Single Cell MALDI-MSI Analysis of Lipids and Proteins within a Replicative Senescence Fibroblast Model Emily R Sekera, Lorena Rosas, Joseph H Holbrook, Quetzalli D Angeles-Lopez, Timur Khaliullin, Mauricio Rojas, Ana L Mora, Amanda B Hummon 2024
Solution structure, dynamics and tetrahedral assembly of Anti-TRAP, a homo-trimeric triskelion-shaped regulator of tryptophan biosynthesis in Bacillus subtilis Craig A McElroy, Elihu C Ihms, Deepak Kumar Yadav, Melody L Holmquist, Vibhuti Wadhwa, Vicki H Wysocki, Paul Gollnick, Mark P Foster 2024
Structural Basis for the Interaction of Redβ Single-Strand Annealing Protein with Escherichia coli Single-Stranded DNA-Binding Protein Katerina Zakharova, Mengqi Liu, Jacelyn R Greenwald, Brian C Caldwell, Zihao Qi, Vicki H Wysocki, Charles E Bell 2024
Structures and functions of short argonautes Chen Wang, Zhangfei Shen, Xiao-Yuan Yang, Tian-Min Fu 2024
Target cleavage and gene silencing by Argonautes with cityRNAs Huaqun Zhang, GeunYoung Sim, Audrey C Kehling, Vishal Annasaheb Adhav, Andrew Savidge, Benjamin Pastore, Wen Tang, Kotaro Nakanishi 2024
The early transition to cold-induced browning in mouse subcutaneous white adipose tissue (scWAT) involves proteins related to nerve remodeling, cytoskeleton, mitochondria, and immune cells Magdalena Blaszkiewicz, Cory P Johnson, Jake W Willows, Miranda L Gardner, Dylan R Taplin, Michael A Freitas, Kristy L Townsend 2024
Topological rearrangements activate the HerA-DUF anti-phage defense system Anthony D Rish, Elizabeth Fosuah, Zhangfei Shen, Ila A Marathe, Vicki H Wysocki, Tian-Min Fu 2024
Tracking Drugs and Lipids: Quantitative Mass Spectrometry Imaging of Liposomal Doxorubicin Delivery and Bilayer Fate in Three-Dimensional Tumor Models Arbil Lopez, Joseph H Holbrook, Gabrielle E Kemper, Jessica K Lukowski, William T Andrews, Amanda B Hummon 2024
Transcriptional regulation of amino acid metabolism by KDM2B, in the context of ncPRC1.1 and in concert with MYC and ATF4 Evangelia Chavdoula, Vollter Anastas, Alessandro La Ferlita, Julian Aldana, Giuseppe Carota, Mariarita Spampinato, Burak Soysal, Ilaria Cosentini, Sameer Parashar, Anuvrat Sircar, Giovanni Nigita, Lalit Sehgal 2024
Translation of HIV-1 unspliced RNA is regulated by 5' untranslated region structure Zetao Cheng, Saiful Islam, Joseph G Kanlong, Madeline Sheppard, Heewon Seo, Olga A Nikolaitchik, Michael G Kearse, Vinay K Pathak, Karin Musier-Forsyth, Wei-Shau Hu 2024
Ultrafast Primary Dynamics and Isomerization Mechanism of a Far-Red Sensing Cyanobacteriochrome Kangwei Niu, Dihao Wang, Yifei Zhang, Linta Biju, Na Liu, Xi Wang, Lijuan Wang, Zhong Ren, Faming Lu, Xiaojing Yang, Dongping Zhong 2024
YTHDF2 governs muscle size through a targeted modulation of proteostasis Christopher Gilbert, Christoph Lepper, Federica Accornero, Charles P Rabolli, Volha A Golubeva, Kristina M Sattler, Meifang Wang, Arsh Ketabforoush, W David Arnold 2024
AIMP3 maintains cardiac homeostasis by regulating the editing activity of methionyl-tRNA synthetase Anindhya S Das, Charles P Rabolli, Colton R Martens, Han-Kai Jiang, Yingshen Zhang, Aubree A Zimmer, Kevin Lin, Kedryn K Baskin, Juan D Alfonzo, Federica Accornero 2025
An AT-hook transcription factor promotes transcription of histone, spliced-leader, and piRNA clusters Yi-Hui Wang, Hannah L Hertz, Benjamin Pastore, Wen Tang 2025