Publications

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Title Investigators
Accurate protein structure prediction with hydroxyl radical protein footprinting data Sarah Biehn, Steffen Lindert
Acetylation of histone H3 at the nucleosome dyad alters DNA-histone binding Justin North, Michael Poirier, Jonathan W Picking (OSBP alumni), Mridula Manohar, Alex M Mooney, Robin J Nakkula, Annick Edon, Richard Fishel, Jennifer J Ottesen
Cadaverine Is a Switch in the Lysine Degradation Pathway in Pseudomonas aeruginosa Biofilm Identified by Untargeted Metabolomics. Abigail Leggett, Rafael Brüschweiler, Da-Wei Li, Devin Sindeldecker, Amelia Staats, Nicholas Rigel, Lei Bruschweiler-Li, Paul Stoodley
Chemical footprinting and kinetic assays reveal dual functions for highly conserved eukaryotic tRNAHis guanylyltransferase residues Jane Jackman, Ashanti O Matlock (OSBP alumni), Brian A Smith (OSBP alumni)
Controlling the Direction of S-Nitrosation versus Denitrosation: Reversible Cleavage and Formation of an S-N Bond within a Dicopper Center. Alina Yerbulekova, Hannah Shafaat, Tao W, Moore CE, Zhang S
Engineered Extracellular Vesicles Derived from Dermal Fibroblasts Attenuate Inflammation in a Murine Model of Acute Lung Injury. Julian Aldana Aroca, Ana I Salazar-Puerta, Maria A Rincon-Benavides, Tatiana Z Cuellar-Gaviria, Gabriela Vasquez Martinez, Lilibeth Ortega-Pineda, Devleena Das, Daniel Dodd, Charles A Spencer, Binbin Deng, David W McComb, Joshua A Englert, Samir Ghadiali, Diana Zepeda-Orozco, Loren E Wold, Daniel Gallego-Perez, Natalia Higuita-Castro
In utero estrogenic endocrine disruption alters the stroma to increase extracellular matrix density and mammary gland stiffness Clarissa Wormsbaecher, Craig Burd, Andrea R Hindman, Alex Avendano, Marcos Cortes-Medina, Caitlin E Jones, Andrew Bushman, Lotanna Onua, Claire E Kovalchin, Alina R Murphy, Hannah L Helber, Ali Shaprio, Kyle Voytovitch, Xingyan Kuang, Renan Aguilar-Valenzuela, Jennifer L Leight, Jonathan W Song
It takes two to Tango: Two gates orchestrate the opening of human TRPM2 Anthony Rish, Tianmin Fu, Zhangfei Shen
Kinesin's front head is gated by the backward orientation of its neck linker Vedud Purde (OSBP alumni), Merve Yusra Dogan, Sinan Can, Frank B Cleary, Ahmet Yildiz
Manganese-dependent microRNA trimming by 3'→5' exonucleases generates 14-nucleotide or shorter tiny RNAs. Cameron Divoky, Kotaro Nakanishi, Sim G, Kehling AC, Park MS, Secor J, Zhang H, Malhotra N, Bhagdikar D, Abd El-Wahab EW
Molecular Origin of Ultrafast Water-Protein Coupled Interactions Dongping Zhong, Dihao Wang (OSBP alumni), Yangzhong Qin, Menghui Jia, Jin Yang, Lijuan Wang, Jianhua Xu
Preparation of fully synthetic histone H3 reveals that acetyl-lysine 56 facilitates protein binding within nucleosomes Justin North, Michael Poirier, John C Shimko (OSBP alumni), Aaron N Bruns (OSBP alumni), Jennifer J Ottesen
Structural basis for sequence-independent substrate selection by eukaryotic wobble base tRNA deaminase ADAT2/3. Aubree Zimmer, Juan Alfonzo, Dolce LG, Tengo L, Weis F, Rubio MAT, Kowalinski E
5'-End sequencing in Saccharomyces cerevisiae offers new insights into 5'-ends of tRNAHis and snoRNAs Jane Jackman, Samantha Dodbele (OSBP alumni), Blythe Moreland, Spencer M Gardner, Ralf Bundschuh
A double on the Rocs with a twist: Rocaglamide A targets multiple DEAD-box helicases to inhibit translation initiation Daisy Grove, Michael Kearse
A Microfluidic Chip Enables Isolation of Exosomes and Establishment of Their Protein Profiles and Associated Signaling Pathways in Ovarian Cancer Miranda Gardner, Michael Freitas, Kalpana Deepa Priya Dorayappan, Colin L Hisey, Roman A Zingarelli, Brentley Q Smith, Michelle D S Lightfoot, Rajan Gogna, Meghan M Flannery, John Hays, Derek J Hansford, Lianbo Yu, David E Cohn, Karuppaiyah Selvendiran
A mutation in the THG1L gene in a family with cerebellar ataxia and developmental delay Jane Jackman, Ashanti Matlock (OSBP alumni), Simon Edvardson, Yael Elbaz-Alon, Chaim Jalas, Krishna Patel, Katherine Labbe, Avraham Shaag, Orly Elpeleg
A Novel, Modified Human Butyrylcholinesterase Catalytically Degrades the Chemical Warfare Nerve Agent, Sarin David Wood, Kevin McGarry (OSBP Alumni), Remy F Lalisse, Robert A Moyer, Kristyn M Johnson, Alexi M Tallan, Tyson P Winters, Joeseph E Taris, Craig A McElroy, Erin E Lemmon, Hannah S Shafaat, Yamin Fan, Aniliese Deal, Sean C Marguet, Jill A Harvilchuck, Christopher M Hadad
A photoactive semisynthetic metalloenzyme exhibits complete selectivity for CO2 reduction in water Camille R Schneider (OSBP Alumni), Anastasia C Manesis (OSBP alumni), Michael J Stevenson, Hannah S Shafaat
A review on structural, non-structural, and accessory proteins of SARS-CoV-2: Highlighting drug target sites. Md Siddik Alom, Jahirul Islam M, Nawal Islam N, Kabir M, Halim MA
A Temporal Order in 5'- and 3'- Processing of Eukaryotic tRNAHis Jane Jackman, Tracy M Roach (OSBP alumni), Marie-Theres Pohler, Heike Betat, Mario Morl
A Wide-Field Imaging Approach for Simultaneous Super-Resolution Surface-Enhanced Raman Scattering Bioimaging and Spectroscopy. Brian Scarpitti, Zachary Schultz, Shoup DN
Accessibility of the histone H3 tail in the nucleosome for binding of paired readers Nathaniel Burge, Michael Poirier, Jovylyn Gatchalian, Xiaodong Wang, Jinzen Ikebe, Khan L Cox, Adam H Tencer, Yi Zhang, Luo Di, Matthew D Gibson, Catherine A Musselman, Hidetoshi Kono, Jeffrey J Hayes, Tatiana G Kutateladze
Accounting for Neighboring Residue Hydrophobicity in Diethylpyrocarbonate Labeling Mass Spectrometry Improves Rosetta Protein Structure Prediction. Sarah Biehn, Steffen Lindert, Danielle M Picarello, Xiao Pan, Richard W Vachet
Active site characterization and activity of the human aspartyl (asparaginyl) β-hydroxylase Jenna Greve, James Cowan, Andrew M Pinkham, Zachariah Thompson